Resource Type
Dataset
Resource Name

Single-cell patch-seq of human pancreatic islet cells

Canonical Identifier
Description
Combined single-cell RNA-seq and electrophysiological profiling of human pancreatic islet cells (pancreas patch-seq) to link transcriptomic phenotypes of islet cells to their physiologic properties. The dataset contains 1,369 pancreas patch-seq cells from human donors (nondiabetic and type II diabetes), 348 cryopreserved patch-seq cells (nondiabetic and type I diabetes) and 3,518 FACS islet cells from the same donors. In total cells from 18 nondiabetic , 7 T2D donors, 3 T1D (cryopreserved) and 3 nondiabetic donors (cryopreserved) were used. Single-cell RNA libraries were done using SmartSeq2.
Contributors
NameOrganizationConsortiumContact
XiaoQing DaiUniversity of Alberta Contact
Seung KimStanford UniversityCTAR, HPAC Contact
Stephen QuakeStanford University Contact
Patrick MacDonaldUniversity of AlbertaHPAC Contact
Tags or Keywords
Defining Manuscript Identifier


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transcriptomic data

Publications
PMID35108513 HIRN SUPPORTED

Contacts
Patrick MacDonald
Seung Kim
RNA-Seq

Publications
PMID36197983 HIRN SUPPORTED

Contacts
Rafael Drigo
Patrick MacDonald
RNA-Seq

Publications
PMID34052132 HIRN SUPPORTED

Contacts
Patrick MacDonald
RNA-Seq
Patch-seq

Publications
PMID39763967 HIRN SUPPORTED

Contacts
Patrick MacDonald
Biosample Characteristics
Biosample Type
Technology Type or Sequencing Platform


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